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PsDIP - Genome of Psoriatic Arthritis. Data Integration Portal
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Expression Search:
This tab let the researcher retrieve the number of times a specific gene
of interest is deregulated in our curated set of psoriatic arthritis signatures.
Search can be done by gene, by microRNA, by type of study or by threshold of
regulation. It is also possible to download the entire matrix of genes and studies.
Expression Database Statistics
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| Tissue | Number of SNP/SNV | Number of CNV | Number of methylated sites | Number of miRNA | Number of mRNA | Number of long noncoding RNA | Number of small noncoding RNA | Number of protein | Number of metabolite | Number of references | Number of sources |
| skin biopsy | - | - | 4293 | 767 | 10881 | 60 | - | 830 | - | 29 | 86 |
| whole blood RNA | - | - | - | 1 | 1591 | 241 | - | - | - | 4 | 12 |
| PBMCs | - | - | 118 | 98 | 3223 | 248 | - | 1203 | - | 13 | 33 |
| serum | - | - | - | 99 | - | - | - | 350 | 143 | 10 | 20 |
| plasma | - | - | - | 404 | - | - | - | 42 | 168 | 8 | 10 |
| synovial tissue | - | - | - | - | 1324 | 3 | - | 22 | - | 3 | 6 |
| synovial fluid | - | - | - | - | - | - | - | 94 | - | 1 | 1 |
| urine | - | - | - | - | - | - | - | - | 6 | 1 | 2 |
| faecal samples | - | - | - | - | - | - | - | - | - | - | - |
| whole blood DNA | 234 | - | 35 | - | - | - | - | - | - | 5 | 6 |
| n.s. | - | - | 30 | - | 228 | 4 | - | - | - | 2 | 9 |
| Total | 234 | 0 | 4476 | 1369 | 17247 | 556 | 0 | 2541 | 317 | 76 | 185 |
GEO Series (regular):
In this tab it is possible to query GEO datasets using clinical parameters or
gene/probe IDs. User can choose to perform a search using datasets collected
directly from GEO (GEO samples tab) or a reduced set of datasets that was
collected from GEO.
GEO Series (regular) Database Statistics
